Published October 13, 2023
| Version
v1
Dataset
Open
Dataset of free energy calculations with a large number of replicas
Creators
Description
This repository contains data and simulation models from the paper:
"Ensemble-Based Approaches Ensure Reliability and Reproducibility"
Shunzhou Wan, Agastya P. Bhati, Alexander D. Wade, Peter V Coveney
Description of the attached files:
Molecular models for compounds complexed with key proteins in SARS-CoV-2, including 3CLPro, PLPro, ADRP and NSP15. The tarball file models.tar contains AMBER format topology files and solvated structures in PDB format. The file results.tar contains the predicted free energies from ensemble simulations with 500 replicas from which conclusive proof can be established on the nature of the free energy distributions.
Files
Files
(114.7 MB)
| Name | Size | Download all |
|---|---|---|
|
Checksum: md5:83a2b3d9639f124b0a047c031ce957c4
PID: http://hdl.handle.net/11304/0fbd4eab-ef2f-4800-a388-64d20a373af6 |
66.0 kB | Download |
|
Checksum: md5:50c603145cf861a16c6031452144bc10
PID: http://hdl.handle.net/11304/0ca89bb3-096e-43e3-946e-a653c103a9a6 |
114.6 MB | Download |
Additional details
Identifiers
- B2SHARE Legacy Record ID
- cdd9f8363f364b5682987cd02520b7e3