Published October 13, 2023 | Version v1
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Dataset of free energy calculations with a large number of replicas

Creators

Description

This repository contains data and simulation models from the paper: "Ensemble-Based Approaches Ensure Reliability and Reproducibility" Shunzhou Wan, Agastya P. Bhati, Alexander D. Wade, Peter V Coveney Description of the attached files: Molecular models for compounds complexed with key proteins in SARS-CoV-2, including 3CLPro, PLPro, ADRP and NSP15. The tarball file models.tar contains AMBER format topology files and solvated structures in PDB format. The file results.tar contains the predicted free energies from ensemble simulations with 500 replicas from which conclusive proof can be established on the nature of the free energy distributions.

Files

Files (114.7 MB)

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Checksum: md5:83a2b3d9639f124b0a047c031ce957c4

PID: http://hdl.handle.net/11304/0fbd4eab-ef2f-4800-a388-64d20a373af6
66.0 kB Download
Checksum: md5:50c603145cf861a16c6031452144bc10

PID: http://hdl.handle.net/11304/0ca89bb3-096e-43e3-946e-a653c103a9a6
114.6 MB Download

Additional details

Identifiers

B2SHARE Legacy Record ID
cdd9f8363f364b5682987cd02520b7e3